For me, "Jurassic World" and "Les Miserables" are the first that come to mind. Both films do a decent job of entertaining, but the storytelling flaws really revealed themselves with time to consternate.
I find this happening more and more, and the same is true of the opposite. My initial impression of "Manchester by the Sea" was positive, but it definitely rose in favor after thinking about it for the two straight days after seeing it.